Software

MetaProClust-MS1: A tool for clustering metaproteomes using rapid MS1 profiling

Metaproteomics is used to explore the composition, dynamics and function of microbial communities. How-ever, acquiring data by tandem mass spectrometry is time consuming and resource intensive. To mediate this challenge, we present MetaProClust-MS1, …

pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies

**Motivation:** Enzymatic digestion of proteins before mass spectrometry analysis is a key process in metaproteomic workflows. Canonical metaproteomic data processing pipelines typically involve matching spectra produced by the mass spectrometer to a …

Prediction of plant lncRNA by ensemble machine learning classifiers

**Background:** In plants, long non-protein coding RNAs are believed to have essential roles in development and stress responses. However, relative to advances on discerning biological roles for long non-protein coding RNAs in animal systems, this …